³ò Œ?»Hc@s@ddkZddkZd„Zd„Zd„Zd„ZdS(iÿÿÿÿNcsB|i‰‡fd†}t|ti|||ƒ|idƒdS(NcsG|\}}}||9}|iƒ|(||:}||(ti|ˆƒS(N(tsumtscipytdot(t lastalphat.1talphattgammattPyt(tP_ScSA(s9/home/andy/projects/chestnut/chestnut/hmm/algorithms_1.pyt fwdkernel!s     gð?(tAtreducet itertoolstizip(tP_S0tP_ScStPytgammatalphaR ((Rs9/home/andy/projects/chestnut/chestnut/hmm/algorithms_1.pytforwards &c sY‡fd†}t|ti|ddd…|ddd…|ddd…ƒdƒdS(Ncs.|\}}}||(tiˆ||ƒ|S(N(RR(tlastbetaRtbetatRR(R(s9/home/andy/projects/chestnut/chestnut/hmm/algorithms_1.pyt bwdkernel2s iÿÿÿÿgð?(R R R (RRRtbetaR((Rs9/home/andy/projects/chestnut/chestnut/hmm/algorithms_1.pytbackward,sFc s‡fd†}d„}ti||ftiƒ}ti|dftiƒ}t|ti|d|dƒ|d|ƒ} t|ti|ddd…|ddd…ƒti| ƒƒ|iS(NcsC|\}}ˆi|}|iiddƒ|(|i|iƒ|S(Ntaxisi(tTtargmaxtchoose(tlastnuRtpredttL_Pytttemp(tL_ScS(s9/home/andy/projects/chestnut/chestnut/hmm/algorithms_1.pyt vitkernelAs  cSs|\}}||(||S(N((tlastssRtsstR((s9/home/andy/projects/chestnut/chestnut/hmm/algorithms_1.pyt btrkernelEs iiiÿÿÿÿ(Rtzerostint32R R R Rtflat( RtNtL_S0R!tL_PyR"R%tpredtsstnu((R!s9/home/andy/projects/chestnut/chestnut/hmm/algorithms_1.pytviterbi9s /c Csnd„}t|ti||d|d|dƒ|ƒ|ti||ddƒ7}||d|d7}dS(sÇ Key calculations to reestimate model parameters of initial state probability and state transition probabilities. Add to passed arrays u_sum, P_S0, and P_S0_ergodic without normalizing so that the function can be used for multiple segments. Rely on external calculations for the following: 1. Reestimation of output model parameters 2. Multiply u_sum by P_ScS_old 3. Normalization cSs4|\}}}}|ti||||ƒ7}|S(N(Rtouter(tuRtalphat_1RRR((s9/home/andy/projects/chestnut/chestnut/hmm/algorithms_1.pytukernelbsiRiN(R R R RR(RRRRtu_sumRt P_S0_ergodicR3((s9/home/andy/projects/chestnut/chestnut/hmm/algorithms_1.pyt reestimate_sQs  (R RRRR/R6(((s9/home/andy/projects/chestnut/chestnut/hmm/algorithms_1.pys s