%%% %%% Bibliography "category" strings: %%% %%% FixMe: When cites cross category boundaries, the \cite numbers %%% FixMe: seem to be getting reset. But when the Bibliography is %%% FixMe: output, they are not. %%% FixMe: Andy wants the order to be: %%% FixMe: Book, Review, Dissertation, Article, WebSite @String{Book = {a Books and Collections}} @String{Review = {b Review Articles}} @String{Dissertation = {c Dissertations and Theses}} @String{Article = {d Research Articles}} @String{WebSite = {e Web Sites}} @Article{Baum67, author = {L.E. Baum and J.A. Eagon}, title = {An Inequality with Applications to Statistical Estimation for Probabilistic Functions of {M}arkov Processes and to a Model for Ecology}, journal = {Bulletin of the American Mathematical Society}, year = 1967, volume = 73, number = 3, pages = {360-363}, month = {May}, category = Article } @Article{Baum70, author = {L.E. Baum and T. Petrie and G. Soules and N. Weiss}, title = {A maximization technique occurring in the statistical analysis of probabilistic functions of {M}arkov chains}, journal = {The Annals of Mathematical Statistics}, volume = 41, number = 1, pages = {164-171}, year = 1970, category = Article } @PhdThesis{Beal03, author = {Matthew J. Beal}, title = {Variational Algorithms for Approximate {B}ayesian Inference}, school = {Gatsby Computational Neuroscience Unit, University College London}, year = 2003, note = {Chapter 3, entitled ``Variational {B}ayesian Hidden {M}arkov Models'', review HMMs in general and describes a {B}ayesian approach to estimation. The full text of the thesis is available at \biburl{http://www.cse.buffalo.edu/faculty/mbeal/papers.html}}, category = Dissertation } @Article{Benettin80, author = {G. Benettin and L. Galgani and A. Giorgilli and J.-M. Sterlcyn}, title = {{L}yapunov Characteristic Exponents for Smooth Dynamical Systems and for {H}amiltonian Systems; A Method for Computing All of Them}, journal = {Meccanica}, year = 1980, volume = 15, pages = 9, category = Article } @Book{Cover91, author = {T.M. Cover and J.A. Thomas}, title = {Elements of Information Theory}, publisher = {Wiley}, year = 1991, address = {NY}, category = Book } @Article{Dempster77, author = {A.P. Dempster and N.M. Laird and D.B. Rubin}, title = {Maximum likelihood from incomplete data via the {EM} algorithm}, journal = {J.R. Stat. Soc. B}, volume = 39, pages = {1-38}, year = 1977, category = Article } @Book{Duda01, author = {Richard O. Duda and Peter E. Hart and David G. Stork}, title = {Pattern Classification}, publisher = {Wiley}, year = 2001, edition = 2, category = Book } @InProceedings{Ferguson80, author = {J.D. Ferguson}, title = {Hidden {M}arkov Analysis: An Introduction}, booktitle = {Proc. of the Symposium on the Applications of Hidden {M}arkov Models to Text and Speech}, publisher = {IDA-CRD}, year = 1980, pages = {8-15}, address = {Princeton}, category = Review } @Book{Fletcher87, author = {R. Fletcher}, title = {Practical Methods of Optimization}, publisher = {Wiley}, year = 1987, category = Book } @Article{Fraser86, author = {A. M. Fraser and H. L. Swinney}, title = {Independent coordinates for strange attractors from mutual information}, journal = {Phys. Rev. A}, year = 1986, volume = 33, pages = {1134-1140}, month = {Feb.}, category = Article } @InProceedings{Freund96, author = {Yoav Freund and Robert E. Schapire}, title = {Experiments with a New Boosting Algorithm}, booktitle = {International Conference on Machine Learning}, pages = {148-156}, year = 1996, note = {\biburl{http://citeseer.ist.psu.edu/freund96experiments.html}}, category = Article } @Article{Friedman2000, author = {Jerome Friedman and Trevor Hastie and Robert Tibshirani}, title = {Additive logistic regression: a statistical view of boosting}, journal = {Annals of Statistics}, year = 2000, volume = 28, number = 2, pages = {337-407}, category = Review } @Book{GandL3, author = {Gene H. Golub and Charles F. Van Loan}, title = {Matrix Computations}, publisher = {Johns Hopkins University Press}, year = 1996, address = {Baltimore}, edition = 3, category = Book } @Article{Gauvain94, author = {JL Gauvain and CH Lee}, title = {Maximum {\em a posteriori} estimation for multivariate {G}aussian mixture observations of {M}arkov chains.}, journal = {IEEE Trans. Speech and Audio Processing}, year = 1994, month = {April}, pages = {291-298}, volume = 2, number = 2, category = Article } @Article{Gershenfeld99, author = {N. Gershenfeld and B. Schoner and E. Metois}, title = {Cluster-weighted modeling for time series analysis}, journal = {Nature,}, year = 1999, volume = 379, pages = {329-332}, category = Article } @Book{Gibbs, author = {J.W. Gibbs}, title = {Elementary Principles in Statistical Mechanics Developed with Especial Reference to the Rational Foundation of Thermodynamics}, publisher = {Yale University Press}, year = 1902, note = {Republished by Dover in 1960}, category = Book } @Article{Gordon93, author = {N.J. Gordon and D.J. Salmond and A.F.M. Smith}, title = {Novel approach to nonlinear/non {G}aussian {B}ayesian state estimation}, journal = {IEE Proceedings F}, year = 1993, volume = 140, number = 2, pages = {107-113}, category = Article } @Article{Haken75, author = {H. Haken}, title = {Analogy between higher instabilities in fluids and laser}, journal = {Phys. Lett A}, year = 1975, tvolume = {53A}, pages = {77-78}, category = Article } @Article{Hughes99, author = {J.P. Hughes and P. Guttorp}, title = {A non-homogeneous Hidden {M}arkov Model for Precipitation Occurrence}, journal = {Appl. Statist}, year = 1999, volume = 48, month = {August}, pages = {16-30}, note = {Part 1}, category = Article } @InProceedings{Julier97, author = {S.J. Julier and J.K. Uhlmann}, title = {A new extension of the {K}alman filter to nonlinear systems}, booktitle = {The 11th International Symposium on Aerospace/Defence Sensing, Simulation and Controls, Orlando Florida}, year = 1997, volume = {Multi-Sensor Fusion, Tracking and Resource Management II}, series = {Proc of AeroSense}, category = Article } @Book{KSH00, author = {Thomas Kailath and Ali H. Sayed and Babak Hassibi}, title = {Linear Estimation}, publisher = {Prentice Hall}, year = 2000, category = Book } @Article{Kitagawa96, author = {G. Kitagawa}, title = {Monte-Carlo filter and smoother for non-{G}aussian nonlinear state space models}, journal = {Journal on Computational and Graphical Statistics}, year = 1996, volume = 5, number = 1, pages = {1-25}, category = Article } @Article{Kullback51, author = {S. Kullback and R.A. Leibler}, title = {On Information and Sufficiency}, journal = {Ann. Math. Stat.}, year = 1951, volume = 22, pages = {79-86}, category = Article } @Article{Lorenz63, author = {E. Lorenz}, title = {Deterministic Nonperiodic Flow}, journal = {J. Atmos. Sci.}, year = 1963, volume = 20, page = 130, category = Article } @Book{Luenberger73, author = {D. G. Luenberger}, title = {Introduction to Linear and Nonlinear Programming}, publisher = {Addison-Wesley}, year = 1973, address = {Reading, MA}, category = Book } @Book{Maybeck79, author = {Peter S. Maybeck}, title = {Stochastic models, estimation, and control}, publisher = {Academic Press}, year = 1979, category = Book } @Book{Maybeck82, author = {Peter S. Maybeck}, title = {Stochastic models, estimation, and control, Vol 2}, publisher = {Academic Press}, year = 1982, category = Book } @Book{McLachlan96, author = {G.J. McLachlan and T. Krishnan}, title = {The EM Algorithm and Extensions}, publisher = {Wiley}, year = 1996, category = Book } @InProceedings{Ormoneit95, author = {D Ormoneit and V Tresp}, title = {Improved {G}aussian mixture density estimates using {B}ayesian penalty term and network averaging}, booktitle = {Advances in Neural Information Processing Systems}, year = 1995, category = Article } @Article{Packard80, author = {N. H. Packard and J. P. Crutchfield and J. D. Farmer and R.S. Shaw}, title = {Geometry from a time series}, journal = {Phys. Rev. Lett.}, year = 1980, volume = 45, number = 9, pages = {712-716}, month = {Sept. 1}, category = Article } @Book{Pearl91a, author = {Judea Pearl}, year = 1991, title = {Probabilistic reasoning in intelligent systems: networks of plausible inference}, edition = {second}, publisher = {Morgan Kaufmann, San Mateo (Calif.)}, category = Book } @Article{Penzel02, author = {T. Penzel and J. McNames and P. de Chazal and B. Raymond and A. Murray and G. Moody}, title = {Systematic comparison of different algorithms for apnea detection based on electrocardiogram recordings}, journal = {Medical \& Biological Engineering \& Computing}, year = 2002, volume = 40, pages = {402-407}, category = Review } @Misc{gutenberg, author = {Gutenberg}, title = {Project {G}utenberg}, howpublished = {Web Site}, note = {\biburl{http://www.gutenberg.org} Founded by M. Hart}, category = WebSite } @Misc{PhysioToolkit, author = {PhysioNet}, title = {PhysioToolkit -- Open Source Software for Biomedical Science and Engineering}, howpublished = {Web Site}, note = {\biburl{http://www.physionet.org/physiotools/index.shtml}}, category = WebSite } @Misc{FraserPhysicsHMM, author = {Andrew M. Fraser}, title = {Software for hidden {M}arkov models}, howpublished = {Web Site}, note = {\biburl{http://www.fraserphysics.com/~andy/hmmdsbook} and \biburl{www.siam.org/~fraser/XXXX}}, category = WebSite } @Misc{SIAMHMM, author = {Andrew M. Fraser}, title = {Software for hidden {M}arkov models}, howpublished = {Web Site}, note = {\biburl{www.siam.org/~fraser/XXXX}}, category = WebSite } @Misc{ubuntu, author = {Ubuntu}, title = {Ubuntu}, howpublished = {Web Site}, note = {\biburl{http://www.ubuntu.com} Distributed by Canonical Ltd.}, category = WebSite } @Misc{debian, author = {debian}, title = {Debian - The Universal Operating System}, howpublished = {Web Site}, note = {\biburl{http://www.debian.org}}, category = WebSite } @InProceedings{Poritz88, author = {A.B. Poritz}, title = {Hidden {M}arkov Models: A Guided Tour}, booktitle = {Proc. IEEE Intl. Conf. on Acoust. Speech and Signal Proc.}, year = 1988, publisher = {IEEE}, address = {Piscataway, NJ}, category = Review } @Book{Press92, author = {W. H. Press and B. P. Flannery and S. A. Teukolsky and W. T. Veterling}, title = {Numerical Recipes in C: the art of scientific computing}, edition = {2nd}, publisher = {Cambridge University Press}, year = 1992, address = {Cambridge}, category = Book } @Article{Rabiner89, author = {L. Rabiner}, title = {A tutorial on Hidden {M}arkov Models and selected applications in speech recognition}, journal = {Proceedings of the IEEE}, year = 1989, volume = 77, number = 2, pages = {257-286}, category = Review } @InProceedings{Rechtsteiner2000, author = {Andreas Rechtsteiner and Andrew M. Fraser}, title = {Hidden States for Modeling Interactions between disparate Spatiotemporal Scales}, booktitle = {Proceedings of the International Conference on Complex Systems (ICCS)}, year = 2000, category = Article } @Article{Redner84, author = {R.A. Redner and H.F. Walker}, title = {Mixture densities, maximum likelihood and the {EM} algorithm}, journal = {SIAM Review}, volume = 26, pages = {195-202}, year = 1984, category = Article } @Article{Rosales04, author = {ROSALES RA and FILL M and ESCOBAR AL}, title = {Calcium regulation of single ryanodine receptor channel gating analyzed using HMM/MCMC statistical methods}, journal = {J Gen Physiol}, year = 2004, volume = 123, number = 5, pages = {533-53}, month = {May}, category = Article } @Article{Sauer91, author = {T. Sauer and J.A. Yorke and M. Casdagli}, title = {Embedology}, journal = {J. Stat. Phys.}, year = 1991, volume = 65, pages = {579-616}, category = Review } @Book{Schafer97, author = {J.L. Schafer}, title = {Analysis of Incomplete Multivariate Data}, publisher = {Chapman Hall/CRC}, year = 1997, number = 72, series = {Monographs on Statistics and Applied Probability}, category = Book } @InProceedings{Takens81, author = {F. Takens}, title = {Detecting strange attractors in turbulence}, booktitle = {Dynamical Systems and Turbulence, Warwick, 1980, Lecture notes in mathematics vol. 898}, year = 1981, editor = {D. A. Rand and L.S. Young}, pages = {366-381}, publisher = {Springer}, address = {Berlin}, category = Article } @Article{Tang92, author = {D.Y. Tang and C.O. Weiss and E. Roldan and G.J. de Valcarcel}, title = {Deviation from {L}orenz-type dynamics of an NH$_3$ ring laser}, journal = {Optics Communications}, year = 1992, volume = 89, pages = {47-53}, category = Article } @Book{Watanabe04, author = {Watanabe and Yamaguchi}, title = {The {EM} algorithm and related statistical models}, publisher = {Marcel Dekker}, year = 2004, category = Book } @Article{Witten87, author = {I.H. Witten and R.M. Neal and J.G. Cleary}, title = {Arithmetic Coding for Data Compression}, journal = {Comm. ACM}, volume = 30, number = 6, year = 1987, month = {June}, pages = {520-540}, category = Review } @Article{Wu83, author = {C.F. Jeff Wu}, title = {On the convergence properties of the {EM} algorithm}, journal = {The Annals of Statistics}, year = 1983, volume = 11, number = 1, pages = {95-103}, month = {March}, category = Article } @Book{ida80, title = {Symposium on the application of hidden {M}arkov models to text and speech}, year = 1980, editor = {J.D. Ferguson}, month = {October}, publisher = {Institute for Defense Analyses, Communications Research Division, Princeton, NJ}, category = Book } @Book{katok95, author = {Katok, Anatole and Hasselblatt, Boris}, title = {Introduction to the Modern Theory of Dynamical Systems}, publisher = {Cambridge University Press}, year = 1995, address = {New York, NY}, category = Book } @Book{mane87, author = {Ricardo Mane}, title = {Ergodic theory and differentiable dynamics}, publisher = {Springer-Verlag}, year = 1987, address = {Berlin}, note = {Translated from the Portuguese by Silvio Levy}, category = Book } @Article{pesin77, author = {Ya. B. Pesin}, title = {Characteristic {L}yapunov exponents and smooth ergodic theory}, journal = {Russ. Math. Surv.}, year = 1977, volume = 32, number = 4, pages = {55-112}, category = Article } @Article{ruelle-1978-1, author = {David Ruelle}, title = {An inequality for the entropy of differentiable maps}, journal = {Bol. Soc. Brasil. Mat.}, year = 1978, volume = 9, number = 1, pages = {83-87}, category = Article } @Misc{python, author = {python}, title = {The Python Programming Language}, howpublished = {Web Site}, note = {\biburl{http://www.python.org/} Created by Guido van Rossum}, category = WebSite } @Misc{scipy, author = {SciPy}, title = {SciPy - Scientific tools for Python}, howpublished = {Web Site}, note = {\biburl{http://www.scipy.org/}}, category = WebSite } @Article{tucker99, author = {W. Tucker}, title = {The {L}orenz attractor exists}, journal = {C. R. Acad. Sci. Ser. I Math.}, volume = 328, number = 12, pages = {1197--1202}, year = 1999, note = {\biburl{http://citeseer.ist.psu.edu/tucker99lorenz.html}}, category = Article } @Article{Viswanath04, author = {Divakar Viswanath}, title = {The fractal property of the {L}orenz attractor}, journal = {Physica D}, year = {2004}, OPTkey = {}, OPTvolume = {190}, OPTnumber = {1-2}, OPTpages = {115-128}, OPTmonth = {}, OPTnote = {}, OPTannote = {}, category = Article } @Book{vapnik98, author = {Vladimir Vapnik}, title = {Statistical Learning Theory}, publisher = {Wiley-Interscience}, year = 1998, category = Book } @PhdThesis{vixie02, author = {Kevin R. Vixie}, title = {Signals and Hidden Information}, school = {Portland State University}, year = 2002, note = {available as Los Alamos Lab report LA-13881-T}, category = Dissertation } @InCollection{young95-1, author = {L. Young}, title = {Ergodic theory of differentiable dynamical systems}, booktitle = {Real and Complex Dynamical Systems}, publisher = {Kluwer}, year = 1995, note = {\biburl{http://citeseer.ist.psu.edu/young95ergodic.html}}, editor = {B. Branner and P. Hjorth}, category = Review } @Comment Local Variables: @Comment mode: bibtex @Comment bibtex-align-at-equal-sign: t @Comment bibtex-entry-format: '(opts-or-alts numerical-fields page-dashes inherit-booktitle realign last-comma delimiters unify-case) @Comment bibtex-maintain-sorted-entries: t @Comment End: